PlantMod

PlantMod was developed for research and university teaching in plant, crop and pasture science. It is a suite of interconnected biophysical models first published in 1994. The current version, released in 2010, has been completely revised and rewritten. PlantMod includes models of:

  • leaf and canopy photosynthesis and respiration
  • canopy transpiration
  • canopy temperature
  • canopy energy balance

Ian first developed PlantMod after the publication of the text Plant and Crop Modelling (1990, 2000) co-authored with John Thornley.  (Plant and Crop Modelling was originally published by Oxford University Press and re-released by The Blackburn Press.  It is available at http://blackburnpress.stores.yahoo.net/biobook1.html.)  His aim with PlantMod was to take complex mathematical models and make them accessible to interested researchers and students. Computer power and software tools were less accessible than today and PlantMod was well received as a new means of researching and teaching plant science.  His work moved into the area of developing pasture and crop simulation models, in particular DairyMod and the SGS Pasture Model, but he was keen to bring PlantMod up to date and so wrote the more recent version.

There is no charge for PlantMod and people are welcome to use it in their studies and research.

Installing PlantMod

An evaluation copy of PlantMod is available. This version gives full access to the models and simulations but you won’t be able to save your work.

If you would like the full version, contact Ian for a serial number. There is no charge for PlantMod.

PlantMod requires Windows XP or later and the current version number is 4.1.2. The installation file is approximately 1.5 MB.

Install PlantMod

Publications

The canopy photosynthesis component of PlantMod has been published in the Annals of Botany:

Johnson, I., Thornley J., Frantz, J. and Bugbee, B. 2010. A model of canopy photosynthesis incorporating protein distribution through the canopy and its acclimation to light, temperature and CO2. Annals of Botany 106:735-749.

Download paper: http://aob.oxfordjournals.org/content/106/5/735.full

All of the models in PlantMod are completely described in the documentation.

PlantMod mathematical documentation

PlantMod’s mathematical documentation has five chapters:

1. Background mathematics, physics and chemistry
2. Canopy radiation balance
3. Leaf photosynthesis and respiration
4. Canopy photosynthesis and respiration
5. Canopy transpiration, temperature and energy budget

Model structure

The models give insight into key processes in crop and pasture modelling, including photosynthesis, respiration, water use, temperature, and energy budget, as influenced by environmental conditions and physiological parameters.

The different graph options allow over 250 response curves to be plotted. Graphs and simulation data can be copied to the clipboard for use in programs such as Word or Excel.

The two main modules of PlantMod are photosynthesis and energy.

Photosynthesis:

  • canopy light interception and attenuation
  • single leaf photosynthesis and respiration
  • instantaneous canopy photosynthesis
  • daily canopy photosynthesis

Energy:

  • canopy transpiration
  • canopy temperature
  • canopy energy balance